PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G126600.2
Common NameB456_012G126600, LOC105780790
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 422aa    MW: 46517.2 Da    PI: 6.7733
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G126600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.56.4e-28158212156
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                         k++++WtpeLH+rFv+aveqL G +kA+P++ilelm++++Lt+++++SHLQkYR++
  Gorai.012G126600.2 158 KTKVDWTPELHRRFVQAVEQL-GVDKAVPSRILELMGIDCLTRHNIASHLQKYRSH 212
                         6799*****************.********************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.937155214IPR017930Myb domain
SuperFamilySSF466898.06E-19156215IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.3E-27156215IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-26158212IPR006447Myb domain, plants
PfamPF002494.4E-8161210IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MLAVSPLRNT RNDENKGKME SFSIISSEEF PDFAEGNLLE SIDFDDLFIG IDEGDMLPDL  60
EMDPEILADL PTSRCDVEES MNTSVEKTDE DSSQRKEEEE EEDKISGSGS GSSSSKGEEI  120
FSKREEPNAV DKTPSKYAVK GRKSSAAQAK NNNQGKRKTK VDWTPELHRR FVQAVEQLGV  180
DKAVPSRILE LMGIDCLTRH NIASHLQKYR SHRKHLLARE AEAANWTQRR QMYGGAATPA  240
GGGKRDISPW LAPTMGFPPM SPMHHHHFRP LHVWGHPTLD QSLVHLWTKH PAHTTSQPPQ  300
PPQSTWGPPP ANPSFWHHHH QRVSNGLTPG TPCFPQPIAP TRFRAAPVPG IPPHHHGTGG  360
QSGPHPLIDF HPSKESIDAA IGDVLTKPWL PLPLGLKPPS TDSVLGELQR QGVPKIPPSC  420
A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-16155210257ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT4288704e-43KT428870.1 UNVERIFIED: Ilex paraguariensis isolate E3 transcription activator GLK1-like mRNA, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012460751.10.0PREDICTED: transcription activator GLK1-like isoform X4
SwissprotQ9SIV31e-103GLK1_ARATH; Transcription activator GLK1
TrEMBLA0A0D2TNL70.0A0A0D2TNL7_G
STRINGPOPTR_0007s01230.11e-177(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.16e-78GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]